Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KXB60460.1Hypothetical protein; KEGG: snc:HMPREF0837_11442 7.1e-07 nic; nickase. (177 aa)    
Predicted Functional Partners:
KXB69264.1
UvrD/REP helicase; KEGG: abu:Abu_2069 2.3e-43 recombination protein RecB K03582; Psort location: Cytoplasmic, score: 9.94.
  
 
 0.670
DnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.670
KXB66239.1
Transcriptional regulator, effector binding domain protein; KEGG: pjd:Pjdr2_5110 0.0040 AraC family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.629
KXB67862.1
HRDC domain protein; KEGG: apg:APA12_12590 4.0e-10 recQ; DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.601
KXB69755.1
Hypothetical protein; KEGG: zin:ZICARI_050 2.6e-07 rpoB; putative DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.568
PcrA
KEGG: lba:Lebu_1390 0. UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.523
KXB64668.1
Hypothetical protein; KEGG: btl:BALH_4453 0.00062 DNA-7-methylguanine glycosylase; Psort location: Cytoplasmic, score: 8.96.
  
     0.482
KXB60459.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.456
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.442
KXB70016.1
KEGG: shn:Shewana3_3590 8.5e-13 single-strand binding protein K03111.
   
 
 0.417
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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