Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB60207.1ComEC/Rec2-like protein; KEGG: apb:SAR116_0501 2.5e-14 DNA uptake protein ComEC K02238; Psort location: CytoplasmicMembrane, score: 10.00. (544 aa)    
Predicted Functional Partners:
KXB69050.1
DNA protecting protein DprA; KEGG: ccm:Ccan_01460 1.3e-41 protein smf K04096; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.851
KXB60206.1
Prepilin-type cleavage/methylation protein.
  
  
 0.851
KXB70237.1
comF family protein; KEGG: pva:Pvag_2959 7.2e-10 yhgH; amidophosphoribosyltransferase; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.818
KXB69229.1
Mg chelatase-like protein; KEGG: ccm:Ccan_16640 3.0e-113 competence protein comM K07391; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.755
KXB64131.1
Peptidase, A24 family; KEGG: lba:Lebu_0621 8.7e-59 peptidase A24A prepilin type IV; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 9.82.
   
  
 0.524
KXB60208.1
KEGG: lba:Lebu_1544 8.6e-52 alkylphosphonate utilization operon protein PhnA; K06193 phosphonoacetate hydrolase.
       0.518
KXB69680.1
Bacterial type II secretion system protein F domain protein; KEGG: apb:SAR116_2517 1.7e-30 type II secretion system PilC K02653; Psort location: CytoplasmicMembrane, score: 10.00.
   
  
 0.514
RecJ-2
KEGG: lba:Lebu_0382 0. single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.514
RadC
KEGG: apb:SAR116_0666 8.5e-29 DNA repair protein RadC K03630; Psort location: Cytoplasmic, score: 9.97; Belongs to the UPF0758 family.
 
  
 0.471
RecJ
KEGG: lba:Lebu_1315 7.1e-270 single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.463
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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