Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXB59891.1TIGR02594 family protein; KEGG: edi:EDI_341030 1.7e-14 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96. (1305 aa)    
Predicted Functional Partners:
KXB59892.1
Hypothetical protein.
       0.757
KXB67713.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.740
KXB64645.1
Exonuclease; KEGG: lba:Lebu_1206 8.1e-111 exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 8.96.
  
   0.729
AphA
HAD phosphatase, family IIIB; KEGG: lba:Lebu_0307 1.2e-125 aphA; acid phosphatase/phosphotransferase; K03788 acid phosphatase (class B).
  
     0.640
KXB69247.1
Hypothetical protein; KEGG: pfo:Pfl01_2683 1.2e-08 outer membrane autotransporter barrel protein; K12685 subtilase-type serine protease.
 
     0.631
KXB59890.1
Leucine Rich repeat-containing domain protein; KEGG: isc:IscW_ISCW005645 1.2e-09 lumican, putative; Psort location: Cytoplasmic, score: 8.96.
       0.620
KXB65472.1
Hypothetical protein; KEGG: edi:EDI_341030 0.00022 intracellular protein transport protein USO1.
 
    0.617
KXB63234.1
Polysaccharide biosynthesis protein; KEGG: cco:CCC13826_0528 3.6e-24 cytosol aminopeptidase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.547
KXB59893.1
Hypothetical protein; KEGG: tva:TVAG_332600 7.3e-07 hypothetical protein; K10866 DNA repair protein RAD50; Psort location: Cytoplasmic, score: 8.96.
       0.496
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.478
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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