Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB59893.1Hypothetical protein; KEGG: tva:TVAG_332600 7.3e-07 hypothetical protein; K10866 DNA repair protein RAD50; Psort location: Cytoplasmic, score: 8.96. (738 aa)    
Predicted Functional Partners:
KXB59894.1
Hypothetical protein; KEGG: sun:SUN_1186 0.0023 two-component sensor histidine kinase; K10681 two-component system, OmpR family, sensor histidine kinase SaeS; Psort location: Cytoplasmic, score: 8.96.
       0.621
KXB59892.1
Hypothetical protein.
       0.506
KXB59891.1
TIGR02594 family protein; KEGG: edi:EDI_341030 1.7e-14 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
       0.496
KXB59890.1
Leucine Rich repeat-containing domain protein; KEGG: isc:IscW_ISCW005645 1.2e-09 lumican, putative; Psort location: Cytoplasmic, score: 8.96.
       0.409
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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