STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB59922.1HTH domain protein; KEGG: bqy:MUS_2079 1.4e-37 transcriptional regulator; Psort location: Cytoplasmic, score: 8.96. (298 aa)    
Predicted Functional Partners:
KXB59919.1
Transcriptional regulator, effector binding domain protein; KEGG: fnu:FN1704 0.0066 serine protease K07001; Psort location: Cytoplasmic, score: 8.96.
 
     0.760
KXB63593.1
KEGG: edi:EDI_251860 2.5e-07 KS1 protein precursor.
  
     0.659
KXB59921.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.631
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.615
KXB59918.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.607
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.579
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.579
KXB59920.1
Glyoxalase family protein; KEGG: bqy:MUS_1286 0.00068 yraH; lactoylglutathione lyase; Psort location: Cytoplasmic, score: 8.96.
 
     0.546
KXB69916.1
KEGG: str:Sterm_2945 5.8e-14 hypothetical protein; K03060 DNA-directed RNA polymerase subunit omega.
    
   0.524
KXB59923.1
NlpC/P60 family protein; KEGG: cth:Cthe_0605 3.2e-22 peptidase PgdS; K01447 N-acetylmuramoyl-L-alanine amidase.
       0.434
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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