Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nrdRTranscriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (152 aa)    
Predicted Functional Partners:
KXB59930.1
Septum formation initiator.
       0.643
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
     
 0.608
KXB59928.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: lba:Lebu_0857 1.5e-61 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component; Psort location: Cytoplasmic, score: 9.97.
       0.600
KXB59926.1
Hypothetical protein.
       0.519
KXB59931.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.517
KXB59925.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
     0.497
KXB59932.1
Trypsin; KEGG: sng:SNE_A06530 3.0e-81 deGP10; protease Do-like 10; Psort location: Periplasmic, score: 9.76.
       0.496
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.432
lolD
Putative lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
     
 0.411
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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