Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB59962.1Putative potassium/sodium efflux P-type ATPase, fungal-type; KEGG: lba:Lebu_0881 0. ATPase; K01537 Ca2+-transporting ATPase; Psort location: CytoplasmicMembrane, score: 10.00. (891 aa)    
Predicted Functional Partners:
rpsH
Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
   0.539
KXB64545.1
Aldehyde-alcohol dehydrogenase; KEGG: lba:Lebu_2076 0. bifunctional acetaldehyde-CoA/alcohol dehydrogenase; K04072 acetaldehyde dehydrogenase / alcohol dehydrogenase; Psort location: Cytoplasmic, score: 9.97; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 0.535
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
    
   0.527
KXB59963.1
DNA-binding protein HU; KEGG: apb:SAR116_0125 2.3e-12 histone family protein DNA-binding protein K03530; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial histone-like protein family.
       0.523
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
   0.518
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
    
   0.503
KXB69247.1
Hypothetical protein; KEGG: pfo:Pfl01_2683 1.2e-08 outer membrane autotransporter barrel protein; K12685 subtilase-type serine protease.
   
 
 0.490
KXB68160.1
Outer membrane autotransporter barrel domain protein; KEGG: cfu:CFU_1360 9.9e-106 pspB; serine protease; Psort location: OuterMembrane, score: 9.83.
   
 
 0.490
KXB66227.1
Outer membrane autotransporter barrel domain protein; KEGG: cfu:CFU_1360 2.6e-162 pspB; serine protease.
   
 
 0.490
KXB60898.1
Outer membrane autotransporter barrel domain protein; KEGG: cfu:CFU_1360 2.9e-138 pspB; serine protease; Psort location: OuterMembrane, score: 9.83.
   
 
 0.490
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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