Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB59622.1KEGG: apb:SAR116_2125 2.4e-09 AraC family transcriptional regulator; Psort location: Cytoplasmic, score: 9.26. (327 aa)    
Predicted Functional Partners:
KXB59621.1
Hypothetical protein; KEGG: rme:Rmet_4288 7.5e-09 short chain dehydrogenase.
 
     0.750
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.631
KXB59620.1
Short chain dehydrogenase domain protein; KEGG: fte:Fluta_0740 6.1e-35 Retinol dehydrogenase; Psort location: Cytoplasmic, score: 9.26.
 
     0.574
KXB60453.1
Cupin domain protein; KEGG: amu:Amuc_1806 7.5e-69 Carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.482
KXB59619.1
Hypothetical protein; KEGG: fte:Fluta_0740 8.2e-15 Retinol dehydrogenase.
 
     0.481
KXB67236.1
Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.462
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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