Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB59625.1CobW/P47K family protein; KEGG: ftu:FTT_1000c 7.6e-11 cobS; cobalamin (vitamin B12) synthesis protein/P47K family protein; Psort location: Cytoplasmic, score: 9.97. (326 aa)    
Predicted Functional Partners:
KXB59624.1
KEGG: ols:Olsu_0295 2.5e-132 alcohol dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
 
     0.863
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.824
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.690
KXB66224.1
ABC transporter, substrate-binding protein; KEGG: saj:SaurJH9_2430 1.5e-22 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 7.88; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.595
rpmB
Ribosomal protein L28; KEGG: apb:SAR116_1905 1.9e-06 50S ribosomal protein L28 K02902; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.590
KXB64686.1
ABC transporter, substrate-binding protein; KEGG: saj:SaurJH9_2430 1.0e-32 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 7.88.
  
  
 0.539
rpmG
Ribosomal protein L33; KEGG: mmo:MMOB5490 1.1e-05 rpmG; 50S ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.537
KXB59907.1
Amidohydrolase family protein; KEGG: lba:Lebu_0770 3.1e-198 dihydroorotase; K01465 dihydroorotase; Psort location: Cytoplasmic, score: 9.97.
  
    0.442
hisI
KEGG: lba:Lebu_1219 8.4e-109 phosphoribosyl-ATP diphosphatase; K11755 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase; Psort location: Cytoplasmic, score: 9.97; In the N-terminal section; belongs to the PRA-CH family.
     
 0.418
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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