Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB59632.1Hypothetical protein. (73 aa)    
Predicted Functional Partners:
KXB59631.1
Sel1 repeat protein; KEGG: cha:CHAB381_0736 3.4e-06 beta-lactamase HcpA K07126; Psort location: Cytoplasmic, score: 8.96.
       0.618
KXB59630.1
Hypothetical protein.
       0.554
KXB59633.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: osp:Odosp_1305 3.5e-119 Dihydrolipoyl dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
       0.527
KXB59628.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.421
KXB59629.1
Hypothetical protein.
       0.421
Your Current Organism:
Leptotrichia wadei
NCBI taxonomy Id: 157687
Other names: CCUG 47505, CIP 107918, DSM 19758, JCM 16777, L. wadei, Leptotrichia sp. LB16, Leptotrichia wadei Eribe et al. 2004, strain LB 16
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