STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80020.1DNA-binding transcriptional regulator YbjK. (191 aa)    
Predicted Functional Partners:
SDB91578.1
Signal peptidase I Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family.
   
    0.865
SDB80019.1
Hemerythrin HHE cation binding domain-containing protein.
       0.525
SDB86128.1
Uncharacterized membrane protein.
   
    0.477
SDB95620.1
Predicted membrane protein.
   
    0.477
SDB96907.1
Predicted membrane protein.
   
    0.477
SDB80338.1
Iron (metal) dependent repressor, DtxR family.
   
    0.445
SDB80018.1
Luciferase family oxidoreductase, group 1.
       0.431
SDB90035.1
Hypothetical protein.
   
    0.422
SDB84629.1
Alpha-1,2-mannosyltransferase.
  
    0.417
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.