STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80035.1Putative membrane protein. (124 aa)    
Predicted Functional Partners:
SDB89362.1
Signal transduction histidine kinase.
 
    0.851
SDB89367.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
 
    0.833
SDB79785.1
Phage shock protein C (PspC) family protein.
  
    0.750
SDB79786.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
  
    0.750
SDB80036.1
Putative hydrolase of the HAD superfamily.
       0.639
SDB80034.1
Hypothetical protein.
       0.563
SDB80037.1
Maleylpyruvate isomerase.
       0.477
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.