STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80109.1Protein of unknown function. (186 aa)    
Predicted Functional Partners:
SDB80102.1
Protein of unknown function.
 
     0.794
SDB80108.1
Hypothetical protein.
       0.773
rbpA-2
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.767
SDB84055.1
Protein of unknown function.
  
     0.765
SDB83808.1
MerR HTH family regulatory protein.
  
     0.712
SDB85097.1
Protein of unknown function.
  
     0.701
SDB84031.1
Protein of unknown function.
  
     0.696
SDB97407.1
Transmembrane protein of unknown function.
  
     0.689
SDB80168.1
YggT family protein.
  
     0.663
SDB80241.1
Broad specificity phosphatase PhoE.
  
     0.662
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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