STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80365.1Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain. (179 aa)    
Predicted Functional Partners:
SDB80367.1
Fe2+ transport system protein FeoA.
 
   
 0.933
SDB80366.1
Ferrous iron transport protein B.
 
   
 0.890
SDB91551.1
Succinate dehydrogenase subunit B.
  
 
 0.855
SDB85405.1
Cysteine desulfurase.
  
 
 0.842
SDB80413.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.805
SDB80113.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
 
 0.783
nuoI
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
  
 0.747
SDB80692.1
NADH-quinone oxidoreductase subunit I.
   
  
 0.747
SDB87812.1
Modular FeS cluster scaffolding protein NifU.
  
 
 0.731
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 
 0.604
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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