STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80372.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
SDB84785.1
Hypothetical protein.
  
 0.982
SDB90595.1
Hypothetical protein.
  
 0.982
SDB79837.1
WD40 repeat.
    
 0.961
SDB92920.1
Choline dehydrogenase.
    
 0.953
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 0.887
SDB80016.1
DNA repair exonuclease SbcCD nuclease subunit.
    
  0.875
SDB80457.1
Protein of unknown function.
  
 
 0.871
SDB94668.1
Protein of unknown function.
  
 
 0.870
SDB93289.1
Serine/threonine protein phosphatase 1.
    
 0.860
SDB80379.1
ATP-dependent helicase HrpB.
    
 0.857
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.