STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80401.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (329 aa)    
Predicted Functional Partners:
SDB80402.1
Phage integrase family protein.
     0.943
SDB80316.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.720
SDB80413.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.714
SDB90290.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.712
SDB84398.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
   
 0.509
SDB86080.1
Predicted amidophosphoribosyltransferases.
   
    0.485
SDB80403.1
Transposase.
       0.482
SDB80404.1
DNA replication protein DnaC.
       0.482
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.474
SDB93835.1
Prephenate dehydrogenase.
  
    0.467
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.