STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80422.1DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family. (277 aa)    
Predicted Functional Partners:
SDB81094.1
PTS system D-fructose-specific IIA component (F1P-forming), Frc family /PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
 
  
 0.981
SDB81090.1
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.927
SDB91401.1
1-phosphofructokinase.
 
  
 0.866
SDB80424.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
    0.829
SDB80423.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
    0.808
SDB80421.1
Nucleoside-diphosphate-sugar epimerase.
       0.773
SDB88343.1
Ribose 5-phosphate isomerase B.
  
 
 0.639
SDB80730.1
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.610
SDB80420.1
gluconate:H+ symporter, GntP family.
 
     0.569
SDB80419.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
 
  
 0.563
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.