STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80463.1Uncharacterized conserved protein, DUF2249 family. (85 aa)    
Predicted Functional Partners:
SDB88687.1
Nitrite reductase (NO-forming).
 
     0.803
SDB88677.1
Hypothetical protein.
 
     0.792
SDB86881.1
Predicted transcriptional regulator, ArsR family.
 
     0.714
SDB83669.1
Hemerythrin HHE cation binding domain-containing protein.
  
     0.554
SDB80464.1
Threonine synthase.
       0.450
SDB85255.1
Glutamate synthase (NADH) large subunit.
   
    0.430
SDC07073.1
Cytochrome b561.
  
     0.416
SDB80465.1
Arsenite efflux ATP-binding protein ArsA.
       0.407
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.