STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80505.1DNA-binding transcriptional regulator, AcrR family. (200 aa)    
Predicted Functional Partners:
SDB80504.1
ATP-binding cassette, subfamily B.
 
     0.854
SDB80503.1
ATP-binding cassette, subfamily B.
 
     0.848
SDB80506.1
Hypothetical protein.
       0.538
SDB80776.1
Hypothetical protein.
  
     0.501
SDB80502.1
Hypothetical protein.
       0.478
SDB96907.1
Predicted membrane protein.
  
     0.476
SDB80778.1
Protein of unknown function.
  
 
   0.475
SDB86128.1
Uncharacterized membrane protein.
  
     0.474
SDB80108.1
Hypothetical protein.
  
     0.459
SDB95620.1
Predicted membrane protein.
  
     0.453
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.