STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80519.1Ni,Fe-hydrogenase III small subunit. (168 aa)    
Predicted Functional Partners:
SDB80521.1
Formate hydrogenlyase subunit 4.
 
 0.999
SDB80524.1
Ni,Fe-hydrogenase III large subunit.
 
 0.999
SDB80520.1
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit.
 
 
 0.995
SDB80523.1
Hydrogenase-4 component F.
 
 
 0.994
nuoI
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
 
 0.992
SDB80522.1
Hydrogenase-4 component E.
 
  
 0.991
SDB80692.1
NADH-quinone oxidoreductase subunit I.
  
 0.978
SDB88122.1
Multisubunit sodium/proton antiporter, MrpD subunit.
 
 
 0.927
SDB80839.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.906
SDB81739.1
Molydopterin dinucleotide binding domain-containing protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
 0.884
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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