STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80590.1DNA-binding transcriptional regulator, AcrR family. (207 aa)    
Predicted Functional Partners:
SDB80579.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.625
SDB80589.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
       0.531
SDB80588.1
Biphenyl-2,3-diol 1,2-dioxygenase.
 
     0.526
SDB96147.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.430
SDB80587.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.427
SDB95664.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.419
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.