STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB81284.1DNA-binding transcriptional regulator, PadR family. (195 aa)    
Predicted Functional Partners:
SDB81290.1
NitT/TauT family transport system permease protein.
 
     0.625
SDB81295.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
     0.621
SDB81280.1
HCOMODA/2-hydroxy-3-carboxy-muconic semialdehyde decarboxylase.
       0.584
SDB81274.1
2,3-dihydroxy-p-cumate/2,3-dihydroxybenzoate 3,4-dioxygenase.
 
    0.577
SDB81298.1
NitT/TauT family transport system ATP-binding protein.
       0.529
SDB81269.1
Transcriptional regulator PadR-like family protein.
 
    
0.518
SDB81304.1
NitT/TauT family transport system substrate-binding protein.
 
     0.507
SDB91740.1
Phosphotransferase enzyme family protein.
  
     0.476
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.