STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB81913.1TRAP-type C4-dicarboxylate transport system, small permease component. (207 aa)    
Predicted Functional Partners:
SDB79760.1
TRAP transporter, DctM subunit.
  
 0.929
SDB81919.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
  
 0.878
SDB81906.1
TRAP transporter, DctM subunit.
       0.808
SDB81899.1
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein.
       0.773
SDB79762.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
  
 0.486
SDB81924.1
PAS domain S-box-containing protein.
       0.453
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.