STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB80748.1Pilus assembly protein CpaF. (379 aa)    
Predicted Functional Partners:
SDB80746.1
Type II secretion system (T2SS), protein F.
 
  
 0.912
SDB87016.1
Tight adherence protein C.
 
  
 0.900
SDB80747.1
Tight adherence protein B.
  
  
 0.894
SDB87029.1
Tight adherence protein B.
 
  
 0.872
SDB80749.1
Helicase/secretion neighborhood CpaE-like protein.
       0.799
SDB80342.1
Flp pilus assembly protein CpaB.
  
  
 0.479
SDB94941.1
Hypothetical protein.
    
 0.464
SDB97036.1
Type II secretion system (T2SS), protein F.
  
  
 0.457
SDB97045.1
Flp pilus assembly protein TadB.
  
  
 0.457
SDB96990.1
TadE-like protein.
  
    0.409
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.