STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB83421.1Alpha-1,2-mannosidase, putative. (738 aa)    
Predicted Functional Partners:
SDB83425.1
Glycosyltransferase involved in cell wall bisynthesis.
     0.965
SDB83433.1
Drug resistance transporter, EmrB/QacA subfamily.
       0.651
SDB83439.1
Voltage-gated potassium channel.
       0.638
SDB80658.1
dGTPase; Belongs to the dGTPase family. Type 2 subfamily.
  
     0.495
SDB83413.1
Dienelactone hydrolase.
       0.478
SDB80303.1
Membrane protein DedA, SNARE-associated domain.
  
     0.439
SDB90069.1
Acetyltransferase (GNAT) family protein.
  
     0.413
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.