STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB83148.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
SDB83143.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
       0.773
SDB93687.1
Fusaric acid resistance protein-like.
  
     0.592
SDB88527.1
Dynamin family protein.
  
     0.531
SDB92616.1
Uncharacterized membrane protein YgaE, UPF0421/DUF939 family.
  
     0.482
SDB83134.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
       0.479
SDB88517.1
50S ribosome-binding GTPase.
  
     0.449
SDB93931.1
Fusaric acid resistance protein-like.
  
     0.436
SDB90923.1
ATP-binding cassette, subfamily B.
  
     0.409
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.