STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB85481.1PH domain-containing protein. (185 aa)    
Predicted Functional Partners:
SDB85486.1
Hypothetical protein.
       0.807
SDB80666.1
Hypothetical protein.
 
  
 0.695
SDB80636.1
Hypothetical protein.
 
     0.688
SDB80935.1
EcsC protein family protein.
  
     0.659
SDB91310.1
Ribosomal protein S18 acetylase RimI.
  
     0.638
SDB86475.1
Antibiotic biosynthesis monooxygenase.
  
    0.611
SDB80131.1
DNA polymerase III, epsilon subunit.
 
     0.601
SDB80796.1
LytR cell envelope-related transcriptional attenuator.
  
     0.593
SDB89026.1
Phospho-glucose isomerase C-terminal SIS domain-containing protein.
  
     0.588
SDB80067.1
Hypothetical protein.
 
    0.554
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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