STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB88088.1Membrane protease YdiL, CAAX protease family. (362 aa)    
Predicted Functional Partners:
SDB88079.1
Radical SAM family uncharacterized protein.
  
    0.779
SDB88115.1
Multicomponent Na+:H+ antiporter subunit E.
 
     0.722
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.683
SDB88096.1
Multisubunit sodium/proton antiporter, MrpG subunit.
       0.675
SDB88106.1
Multicomponent Na+:H+ antiporter subunit F.
       0.675
SDB88122.1
Multisubunit sodium/proton antiporter, MrpD subunit.
       0.675
SDB88133.1
Multicomponent Na+:H+ antiporter subunit C.
       0.675
SDB88141.1
Multisubunit sodium/proton antiporter, MrpA subunit /multisubunit sodium/proton antiporter, MrpB subunit.
       0.675
SDB83783.1
Hypothetical protein.
  
     0.627
SDB83976.1
Hypothetical protein.
  
     0.618
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.