STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB91740.1Phosphotransferase enzyme family protein. (358 aa)    
Predicted Functional Partners:
SDB91746.1
Lanthionine synthetase C-like protein.
     0.951
SDB91755.1
Serine protease, subtilisin family; Belongs to the peptidase S8 family.
  
    0.776
SDB91758.1
Hypothetical protein.
       0.727
SDB90595.1
Hypothetical protein.
    
 0.656
SDB80457.1
Protein of unknown function.
    
  0.623
SDB86298.1
Hypothetical protein.
    
  0.623
SDB94668.1
Protein of unknown function.
    
  0.623
SDB90159.1
Thiaminase (transcriptional activator TenA); Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4- amino-5-aminomethyl-2-methylpyrimidine to 4-amino-5-hydroxymethyl-2- methylpyrimidine (HMP); Belongs to the TenA family.
  
 
  0.533
SDB91767.1
DNA ligase-1.
       0.532
SDB91735.1
Hypothetical protein.
       0.490
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.