STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB94482.1Two-component system, OmpR family, response regulator. (253 aa)    
Predicted Functional Partners:
SDB95353.1
Signal transduction histidine kinase.
  
 0.962
SDB79828.1
Signal transduction histidine kinase.
  0.887
SDB94476.1
Signal transduction histidine kinase.
  0.887
SDB79749.1
Signal transduction histidine kinase.
  0.886
SDB94382.1
Hypothetical protein.
 
  0.885
SDB79751.1
Hypothetical protein.
  0.864
SDB89917.1
Two-component system, OmpR family, sensor kinase.
 0.864
SDB80278.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.857
SDB90368.1
Two-component system, OmpR family, sensor kinase.
 0.853
SDB81924.1
PAS domain S-box-containing protein.
 
 
 0.852
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.