STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB96334.13-hydroxyisobutyrate dehydrogenase. (307 aa)    
Predicted Functional Partners:
SDB90290.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.875
SDB96352.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
  
 
  0.861
SDB80423.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
 0.847
SDB96319.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.795
SDB80413.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.781
SDB89152.1
Biotin carboxyl carrier protein /biotin carboxylase.
  
 
  0.757
SDB80718.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 
  0.746
SDB91975.1
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
  
 
  0.743
SDB80112.1
Glycerate kinase.
  
 
  0.722
SDB80880.1
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.
  
 
  0.718
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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