STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB96907.1Predicted membrane protein. (398 aa)    
Predicted Functional Partners:
SDB91578.1
Signal peptidase I Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family.
  
    0.806
SDB79790.1
LemA protein.
     0.651
SDB86120.1
Hypothetical protein.
  
     0.481
SDB80020.1
DNA-binding transcriptional regulator YbjK.
   
    0.477
SDB90452.1
Regulatory protein, tetR family.
   
    0.477
SDB80505.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.476
SDB79883.1
Alpha-1,2-mannosyltransferase.
   
    0.469
SDB84629.1
Alpha-1,2-mannosyltransferase.
   
    0.469
SDB80855.1
EcsC protein family protein.
  
     0.462
SDB88962.1
Protein of unknown function.
  
     0.445
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.