STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC00278.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
SDB80413.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.984
SDB90290.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.984
SDB96666.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.975
SDB85255.1
Glutamate synthase (NADH) large subunit.
  
 
 0.913
SDB80695.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.820
SDB80021.1
Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
  
  
 0.790
SDB80942.1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.778
SDB99904.1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.778
SDB90285.1
NADPH-dependent glutamate synthase beta chain.
  
 0.776
SDC00249.1
Malate dehydrogenase.
       0.773
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.