STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC04085.12-Methylisocitrate lyase, PEP mutase family. (269 aa)    
Predicted Functional Partners:
SDB92910.1
Pyruvate dehydrogenase (quinone); Belongs to the TPP enzyme family.
  
 
 0.914
SDB80942.1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.911
SDB99904.1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.911
SDB80413.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.869
SDB90290.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.869
SDB80652.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
  
 
 0.854
mshD
Mycothiol synthase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
   
    0.853
SDB85902.1
Putative hydrolase.
   
    0.853
SDB80718.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 0.836
SDB96666.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.799
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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