STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001006305_00056Unannotated protein. (99 aa)    
Predicted Functional Partners:
GCA_001006305_00055
Unannotated protein.
  
 
 0.966
GCA_001006305_00051
Unannotated protein.
  
 
 0.857
GCA_001006305_01839
Unannotated protein.
 
 
 0.836
GCA_001006305_00085
Unannotated protein.
  
 
 0.815
GCA_001006305_04423
Unannotated protein.
  
   
 0.493
GCA_001006305_04915
Unannotated protein.
 
     0.476
GCA_001006305_00054
Unannotated protein.
       0.458
GCA_001006305_02165
Unannotated protein.
  
   
 0.433
GCA_001006305_00057
Unannotated protein.
       0.428
GCA_001006305_04916
Unannotated protein.
  
     0.416
Your Current Organism:
Silvibacterium bohemicum
NCBI taxonomy Id: 1577686
Other names: Acidobacteriaceae bacterium S15, CECT 8790, LMG 28607, LMG:28607, S. bohemicum, Silvibacterium bohemicum Llado et al. 2016, strain S15
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.