STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001006305_03087Unannotated protein. (212 aa)    
Predicted Functional Partners:
GCA_001006305_00220
Unannotated protein.
   
    0.689
GCA_001006305_04074
Unannotated protein.
    
  0.689
GCA_001006305_01023
Unannotated protein.
 
  
 0.660
GCA_001006305_02249
Unannotated protein.
  
  0.640
GCA_001006305_03539
Unannotated protein.
  
 
 0.620
GCA_001006305_01562
Unannotated protein.
 
  
  0.598
GCA_001006305_01561
Unannotated protein.
    
  0.549
GCA_001006305_01546
Unannotated protein.
    
  0.537
GCA_001006305_00732
Unannotated protein.
   
 
 0.531
GCA_001006305_02477
Unannotated protein.
   
 
 0.531
Your Current Organism:
Silvibacterium bohemicum
NCBI taxonomy Id: 1577686
Other names: Acidobacteriaceae bacterium S15, CECT 8790, LMG 28607, LMG:28607, S. bohemicum, Silvibacterium bohemicum Llado et al. 2016, strain S15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.