STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIZ31887.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa)    
Predicted Functional Partners:
sdhA
Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
 
 
 0.932
AIZ33319.1
Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.848
AIZ31888.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
AIZ33318.1
Succinate dehydrogenase; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
 
     0.763
AIZ31886.1
Aminomethyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.640
AIZ34877.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.627
sdhB
Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.539
zipA
Interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
AIZ35349.1
Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.509
AIZ31767.1
Nucleoid-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
Your Current Organism:
Pseudomonas parafulva
NCBI taxonomy Id: 157782
Other names: AJ 2129, CIP 107617, DSM 17004, IFO 16636, JCM 11244, NBRC 16636, NRIC 0501, P. parafulva, Pseudomonas parafulva Uchino et al. 2002, strain CB-1
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