STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIZ34003.1poly(beta-D-mannuronate) C5 epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)    
Predicted Functional Partners:
algL
poly(beta-D-mannuronate) lyase; Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
AIZ34000.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
AIZ34001.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.983
AIZ34004.1
Alginate O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.983
AIZ35637.1
Alginate biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
AIZ34007.1
Alginate O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.956
AIZ34002.1
Alginate regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.922
AIZ34006.1
poly(beta-D-mannuronate) O-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane-bound acyltransferase family.
 
  
 0.781
AIZ31966.1
Beta-agarase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.774
AIZ33510.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
Your Current Organism:
Pseudomonas parafulva
NCBI taxonomy Id: 157782
Other names: AJ 2129, CIP 107617, DSM 17004, IFO 16636, JCM 11244, NBRC 16636, NRIC 0501, P. parafulva, Pseudomonas parafulva Uchino et al. 2002, strain CB-1
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