STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIR88938.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)    
Predicted Functional Partners:
AIR88937.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.790
AIR89744.1
RNA polymerase sigma-H factor AlgU; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
AIR91525.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.730
AIR91527.1
Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.690
AIR90293.1
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.687
AIR89910.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
AIR89760.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.672
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
  
     0.653
AIR89740.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.648
AIR91405.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.633
Your Current Organism:
Pseudomonas cremoricolorata
NCBI taxonomy Id: 157783
Other names: CIP 107616, DSM 17059, IFO 16634, JCM 11246, NBRC 16634, NRIC 0181, P. cremoricolorata, Pseudomonas cremoricolorata Uchino et al. 2002, Pseudomonas sp. ND07, strain CC-8
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.