STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIR89727.1Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)    
Predicted Functional Partners:
AIR89728.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.804
AIR89726.1
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.
  
    0.761
AIR89725.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.503
Your Current Organism:
Pseudomonas cremoricolorata
NCBI taxonomy Id: 157783
Other names: CIP 107616, DSM 17059, IFO 16634, JCM 11246, NBRC 16634, NRIC 0181, P. cremoricolorata, Pseudomonas cremoricolorata Uchino et al. 2002, Pseudomonas sp. ND07, strain CC-8
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