STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIR90511.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (70 aa)    
Predicted Functional Partners:
AIR90512.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.648
AIR90513.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.648
AIR90514.1
Phage-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
AIR90515.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
AIR90516.1
Prophage PSSB64-02, structural protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
AIR90517.1
Head morphogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
AIR90505.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.457
AIR90506.1
Prophage PSSB64-02; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.457
AIR90507.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.457
AIR90508.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.457
Your Current Organism:
Pseudomonas cremoricolorata
NCBI taxonomy Id: 157783
Other names: CIP 107616, DSM 17059, IFO 16634, JCM 11246, NBRC 16634, NRIC 0181, P. cremoricolorata, Pseudomonas cremoricolorata Uchino et al. 2002, Pseudomonas sp. ND07, strain CC-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.