STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katGHydroperoxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (753 aa)    
Predicted Functional Partners:
AIR91257.1
Amino acid decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.941
katE
Hydroperoxidase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
 0.915
AIR89197.1
Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.
    
 0.915
AIR90929.1
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
    
 0.912
AIR90981.1
Catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.905
AIR91558.1
Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.905
hisC
Histidinol-phosphate aminotransferase; Catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.904
AIR89689.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.904
phhA
Phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AIR89952.1
Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.800
Your Current Organism:
Pseudomonas cremoricolorata
NCBI taxonomy Id: 157783
Other names: CIP 107616, DSM 17059, IFO 16634, JCM 11246, NBRC 16634, NRIC 0181, P. cremoricolorata, Pseudomonas cremoricolorata Uchino et al. 2002, Pseudomonas sp. ND07, strain CC-8
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