STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHT81169.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)    
Predicted Functional Partners:
OHT81170.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.697
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
  
 0.679
OHT81171.1
Secretion protein EspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.641
OHT81172.1
Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.629
OHT81258.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
OHT81173.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
dnaX
DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
  
 0.458
OHT83288.1
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.458
atpH
F0F1 ATP synthase subunit B/delta; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction; Belongs to the ATPase delta chain family.
  
    0.428
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.424
Your Current Organism:
Mycobacteroides saopaulense
NCBI taxonomy Id: 1578165
Other names: CCUG 66554, INCQS 0733, LMG 28586, LMG:28586, M. saopaulense, Mycobacterium saopaulense, Mycobacterium saopaulense Nogueira et al. 2015, Mycobacterium sp. EPM10695, Mycobacterium sp. EPM10906, Mycobacterium sp. IAL 3785, Mycobacterium sp. JAN1, Mycobacterium sp. JAN2, Mycobacteroides saopaulense (Nogueira et al. 2015) Gupta et al. 2018, strain EPM 10906
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