STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQL54609.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)    
Predicted Functional Partners:
KQL55510.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.839
KQL54610.1
RNA polymerase subunit sigma; Expressed in late exponential phase; controls the expression of genes coding cell surface proteins involved in chemotaxis, flagellar assembly, and autolysis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
 
  
 0.820
KQL55509.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
KQL54631.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.790
fliJ
Flagellar biosynthesis chaperone; Rod/hook and filament chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.786
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
    0.779
KQL53258.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
KQL52981.1
Flagellar biosynthesis protein FlgM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.772
KQL54646.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
KQL54960.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
Your Current Organism:
Bacillus shackletonii
NCBI taxonomy Id: 157838
Other names: B. shackletonii, Bacillus shackletonii Logan et al. 2004, CIP 107762, LMG 18435, LMG:18435, bacterium LMG 18435, strain Logan B1724, strain SSI024
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.