STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ32578.1Outer membrane transport energization protein TonB. (249 aa)    
Predicted Functional Partners:
SDR53997.1
Outer membrane receptor proteins, mostly Fe transport.
  
 0.984
SDQ97703.1
Vitamin B12 transporter.
 
 
 0.961
SDQ32607.1
Outer membrane transport energization protein ExbD.
  
 0.955
SDQ32636.1
Outer membrane transport energization protein ExbB.
  
 0.914
SDQ57304.1
Biopolymer transport protein ExbD.
 
 0.896
SDR07299.1
Outer membrane transport energization protein ExbD.
 
 0.895
SDR53939.1
Outer membrane transport energization protein ExbD.
 
 0.894
SDQ92127.1
Cell division and transport-associated protein TolR.
 
 0.865
SDR46623.1
Iron complex outermembrane recepter protein.
  
 0.838
SDR61171.1
Iron complex outermembrane recepter protein.
  
 0.838
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
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