Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDQ35943.1 | SDQ35978.1 | SAMN05445850_0389 | SAMN05445850_0390 | tRNA-processing RNAse BN. | NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family. | 0.573 |
SDQ35943.1 | SDQ36013.1 | SAMN05445850_0389 | SAMN05445850_0391 | tRNA-processing RNAse BN. | Uncharacterized membrane protein. | 0.610 |
SDQ35943.1 | SDQ36044.1 | SAMN05445850_0389 | SAMN05445850_0392 | tRNA-processing RNAse BN. | FAD/FMN-containing dehydrogenase. | 0.506 |
SDQ35943.1 | SDQ70517.1 | SAMN05445850_0389 | SAMN05445850_1483 | tRNA-processing RNAse BN. | Type II secretion system protein N (GspN). | 0.408 |
SDQ35943.1 | SDR42549.1 | SAMN05445850_0389 | SAMN05445850_3821 | tRNA-processing RNAse BN. | Ca2+:H+ antiporter. | 0.458 |
SDQ35943.1 | polA | SAMN05445850_0389 | SAMN05445850_5417 | tRNA-processing RNAse BN. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.405 |
SDQ35943.1 | rnpA | SAMN05445850_0389 | SAMN05445850_1450 | tRNA-processing RNAse BN. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.639 |
SDQ35943.1 | rph | SAMN05445850_0389 | SAMN05445850_0710 | tRNA-processing RNAse BN. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.626 |
SDQ35978.1 | SDQ35943.1 | SAMN05445850_0390 | SAMN05445850_0389 | NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family. | tRNA-processing RNAse BN. | 0.573 |
SDQ35978.1 | SDQ36013.1 | SAMN05445850_0390 | SAMN05445850_0391 | NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family. | Uncharacterized membrane protein. | 0.785 |
SDQ35978.1 | SDQ36044.1 | SAMN05445850_0390 | SAMN05445850_0392 | NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family. | FAD/FMN-containing dehydrogenase. | 0.691 |
SDQ36013.1 | SDQ35943.1 | SAMN05445850_0391 | SAMN05445850_0389 | Uncharacterized membrane protein. | tRNA-processing RNAse BN. | 0.610 |
SDQ36013.1 | SDQ35978.1 | SAMN05445850_0391 | SAMN05445850_0390 | Uncharacterized membrane protein. | NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family. | 0.785 |
SDQ36013.1 | SDQ36044.1 | SAMN05445850_0391 | SAMN05445850_0392 | Uncharacterized membrane protein. | FAD/FMN-containing dehydrogenase. | 0.740 |
SDQ36044.1 | SDQ35943.1 | SAMN05445850_0392 | SAMN05445850_0389 | FAD/FMN-containing dehydrogenase. | tRNA-processing RNAse BN. | 0.506 |
SDQ36044.1 | SDQ35978.1 | SAMN05445850_0392 | SAMN05445850_0390 | FAD/FMN-containing dehydrogenase. | NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family. | 0.691 |
SDQ36044.1 | SDQ36013.1 | SAMN05445850_0392 | SAMN05445850_0391 | FAD/FMN-containing dehydrogenase. | Uncharacterized membrane protein. | 0.740 |
SDQ70517.1 | SDQ35943.1 | SAMN05445850_1483 | SAMN05445850_0389 | Type II secretion system protein N (GspN). | tRNA-processing RNAse BN. | 0.408 |
SDR42549.1 | SDQ35943.1 | SAMN05445850_3821 | SAMN05445850_0389 | Ca2+:H+ antiporter. | tRNA-processing RNAse BN. | 0.458 |
polA | SDQ35943.1 | SAMN05445850_5417 | SAMN05445850_0389 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | tRNA-processing RNAse BN. | 0.405 |
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