STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ50119.1Peptide/nickel transport system permease protein. (342 aa)    
Predicted Functional Partners:
SDQ50167.1
Peptide/nickel transport system permease protein.
 
 0.995
SDQ50193.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.995
SDQ50083.1
Peptide/nickel transport system substrate-binding protein.
 0.991
SDR46112.1
Peptide/nickel transport system ATP-binding protein.
 
 
 0.968
SDR46106.1
Peptide/nickel transport system permease protein.
 
 0.967
SDR46118.1
Peptide/nickel transport system ATP-binding protein.
 
 
 0.950
SDR59570.1
Peptide/nickel transport system permease protein.
 
 
 0.937
SDR61951.1
Peptide/nickel transport system permease protein.
 
 
 0.937
SDR46094.1
Peptide/nickel transport system substrate-binding protein.
 0.932
SDQ48406.1
Glutathione transport system permease protein.
 
 0.928
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
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