STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ77941.1Transglutaminase-like superfamily protein. (632 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.805
SDQ77973.1
Predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis.
       0.773
SDQ78003.1
Hypothetical protein.
       0.773
SDQ78044.1
Hypothetical protein.
       0.773
SDQ78080.1
MoxR-like ATPase.
     
 0.768
SDQ99147.1
Ribosomal protein S18 acetylase RimI.
  
     0.746
SDQ55240.1
Putative copper resistance protein D.
  
     0.739
SDR51935.1
FimV C-terminal domain-containing protein.
  
     0.734
SDQ97416.1
Protein of unknown function.
  
  
  0.716
SDQ58725.1
MJ0042 family finger-like domain-containing protein.
  
     0.690
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
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