STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (562 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase.
 
 0.999
hutI
Imidazolonepropionase.
 
 
 0.999
SDR59644.1
Histidine ammonia-lyase.
 
 0.997
SDR48294.1
Enamidase.
  
 
 0.944
SDR49702.1
Imidazolonepropionase.
  
 
 0.944
SDR58924.1
Imidazolonepropionase.
  
 
 0.944
SDR09531.1
Formimidoylglutamate deiminase.
 
 
 0.924
SDR09482.1
Hypothetical protein.
 
  
 0.915
SDR09429.1
Transcriptional regulator, histidine utilization repressor, GntR family.
 
  
 0.900
SDR09555.1
N-formylglutamate deformylase.
 
  
 0.894
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
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