STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR16760.1Pyocin activator protein PrtN. (88 aa)    
Predicted Functional Partners:
SDR16739.1
Phage integrase family protein.
  
   
 0.767
SDR60068.1
Porin.
  
     0.605
SDR55523.1
Outer membrane protein (porin).
  
     0.578
SDR60998.1
Outer membrane protein (porin).
  
     0.570
SDR16872.1
Hypothetical protein.
 
     0.551
SDR08846.1
Outer membrane protein (porin).
  
     0.547
SDR45985.1
Outer membrane protein (porin).
  
     0.542
SDR60064.1
Outer membrane protein (porin).
  
     0.527
SDR16783.1
Hypothetical protein.
       0.487
SDR16803.1
Hypothetical protein.
       0.487
Your Current Organism:
Paraburkholderia tuberum
NCBI taxonomy Id: 157910
Other names: Burkholderia sp. WSM4174, Burkholderia sp. WSM4175, Burkholderia sp. WSM4176, Burkholderia sp. WSM4177, Burkholderia sp. WSM4179, Burkholderia sp. WSM4180, Burkholderia tuberum, Burkholderia tuberum Vandamme et al. 2003, CCUG 47178, CIP 108238, DSM 18489, LMG 21444, LMG:21444, P. tuberum, Paraburkholderia tuberum (Vandamme et al. 2003) Sawana et al. 2015, strain STM678
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.